![]() ![]() The sex of sample HG03511 in the 1000 Genomes pedigree-corrected. (Why? Because we overlooked this detail when processing the preliminary 1000 Genomes hg38 callset.) A warning, which will be upgraded to an error in the future, is now printed when nonfounders remain during these operations, and neither -nonfounders nor -ac-founders is specified. ac-founders flag added to confirm intentional exclusion of nonfounders from -mac/-max-mac/"-freq counts". : -sample-counts multiallelic-variant heterozygous-haploid bugfix. ![]() Source code, compilation instructions, and the like are on the developer page. ( More detailed credits.) (Usage questions should be sent to the plink2-users Google group, not Christopher's email.) Binary downloadsġ: Intel-labeled builds can still run on AMD processors, and vice versa, but they're statically linked to linear algebra libraries optimized for the labeled vendor. PLINK 2.0 alpha was developed by Christopher Chang, with support from GRAIL, LLC and Human Longevity, Inc., and substantial input from Stanford's Department of Biomedical Data Science.
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